I'd take Weedgee's advice on jetting.
I didn't realize he'd gone for a pod filter as well as the new muffler - but seeing that he has, the jet set-up he's used should be in the ball park for you.
I'm sure Weeg will give you a precise run down on his settings if you drop him a line.
Also the following link will allow you to download a tuning guide from Mikuni.
It's the VM series you want.
Mikuni American Corporation
This gives a pretty good account of how to get the best out of your set-up. Even if you have a different brand of carbie - the thory will still be applicable.
Although the hummer specs say that a 30mm Mikuni is used, it is actually the VM 26 which is most commonly used.
New jets for your carbie should be available at peanut rates.
Good luck with the project.